Index

A

add() (strkernel.lib.motiftrie.MotifTrie method)

C

check_for_motifs() (strkernel.lib.motiftrie.MotifTrie method)

compute_matrix() (strkernel.motifkernel.motifKernel method)

D

dfs() (strkernel.lib.motiftrie.MotifTrie method)

G

gappypair_kernel() (in module strkernel.gappy_kernel), [1]

get_alphabet() (strkernel.lib.motif.Motif method) get_kernel() (strkernel.mismatch_kernel.MismatchKernel method)

I

integerized() (in module strkernel.mismatch_kernel)

M

MismatchKernel (class in strkernel.mismatch_kernel) Motif (class in strkernel.lib.motif)

motifKernel (class in strkernel.motifkernel) MotifTrie (class in strkernel.lib.motiftrie)

N

normalize_kernel() (in module strkernel.mismatch_kernel)

P

preprocess() (in module strkernel.mismatch_kernel)

process_motif() (strkernel.lib.motif.Motif method)

S

strkernel.gappy_kernel (module), [1] strkernel.lib.motif (module)

strkernel.lib.motiftrie (module) strkernel.mismatch_kernel (module) strkernel.motifkernel (module)

T

TrieNode (class in strkernel.lib.motiftrie)